ASG - Alternative Splicing Gallery

About ASG

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Search Human Splicing Graphs

+ BLAST a single FASTA-formatted sequence

Splicing graph of Ensembl gene ENSG00000137309

Sequence builder: Shaded boxes correspond to exons or exon fragments, unshaded ones to introns or up- and downstream sequences. Click on the boxes below or in the splicing graph to select them for output. Click again to deselect.
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Simple alternative splicing events:

Intron retentions 2

Competing 5' splice sites 5

Cassette exons 0

Competing 3' splice sites 2

Edges and vertices are color annotated according to the alternative splicing events in which they participate. Edges that correspond to non-canonical splice sites are denoted with an asterisk (*).

+ Gene information

Ensembl link	ENSG00000137309
Chromosome name	6
Start position	34251784
End position	34260863
Strand	1
Annotation version	ENSG00000137309.3
Description	HIGH MOBILITY GROUP AT-HOOK 1 ISOFORM B; NONHISTONE CHROMOSOMAL HIGH-MOBILITY GROUP PROTEIN HMG-I/HMG-Y. [Source:RefSeq;Acc:NM_002131]
External gene id	HMGA1
GO id & description	GO:0000785 chromatin GO:0003677 DNA binding GO:0005634 nucleus GO:0006355 regulation of transcription, DNA-dependent GO:0007001 chromosome organization and biogenesis (sensu Eukarya)
Disease OMIM id	600701
Disease description	Lipoma (1) (?)
Prosite id	PS00354
Ensemble gene id	ENSG00000137309

+ Links to other alternative splicing databases

ProSplicer	ENSG00000137309
PALS	Hs.380996
SpliceNest	Hs.380996
HASDB	Hs.380996
ASAP	Hs.380996
ASD	ENSG00000137309

+ Resources

Representative assemblies (15)

All assemblies (332)

Probes

Supporting ESTs