Software

• GDA
• QTL Cartographer
• Forensic DNA Mixtures
• Hy-Phy
• Power SSR
• PowerMarker
• Mixed Models and QTLs
• Exact Tests
• Cytonuclear Disequilibria
• Other Software Links

GDA

Genetic Data Analysis (GDA) is a software package for analyzing discrete population genetic data. There are versions of GDA suitable for all Microsoft Windows platforms. The Lewis Lab Software Site has links for downloading the program over the web and instructions for downloading the program using anonymous FTP.

QTL Cartographer

QTL Cartographer is a suite of programs to map quantitative traits using a map of molecular markers.

Forensic DNA Mixtures

Programs for calculating the statistics of forensic DNA mixtures by John D. Storey.

Hy-Phy

Hypothesis Testing Using Phylogenies (Hy-Phy) is a software package for maximum likelihood analyses of genetic sequence data. It is equipped with tools to test various statistical hypotheses. To find out more about the program and to download the program, go to Spencer Muse's web site and choose the Research link.

PowerMarker

PowerMarker, written by Jack Liu, is a comprehensive set of statistical methods for discrete genetic data analysis, designed especially for SNP/SSR data analysis. It also includes a 2-D Viewer and CoreSet batch system.

Mixed Models and QTLs

Programs for mixed model approaches for quantitative genetic analysis by Jun Zhu.

Exact Tests

Exact conditional tests for different combinations of allelic and genotypic disequilibria on haploid and diploid data, or their combination.

Get readme file, source code in UNIX archive, source code in MS-DOS archive, solaris2.6 executable, sgi-irix6.5 executable, MS Windows executable.

Cytonuclear Disequilibrium

See the README File for information on some programs to calculate cytonuclear disequilibria, written by Christopher J. Basten. There are MS Windows and Macintosh binaries as well as the UNIX distribution including source code and a makefile.

Other Software Links

• General Freeware
• Statistical Analysis
• Genetics
• Phylogenetics Software

General Freeware

• Software on NCSU Eos and Unity - software licensed to the University, available for download by registered students, includes Norton AntiVirus software package.
• Netscape - free web browser.
• Adobe Acrobat - software package for reading pdf files.
• Ghost View - free software for viewing postscript (ps) files. Particularly useful for looking at LaTeX documents.

Statistical Analysis

• R Software Package - statistical analysis software, a free version of S-plus.

Genetics

• Genetic Analysis Software
• Genomax
• GCG
• QTL Data Analysis

Phylogenetic Software

• Phylogenetic Analysis Computer Programs
• MEGA2
• PAML
• PHYLIP
• San Diego Supercomputer Center Biology Workbench
• Treeview and other programs by Rod Page