The following Supplementary Information files relate to Nature Genetics 29: 389-395 (2001).

 

 

Jin et al Gene Expression Profiling Results

 

UMFOS.xls (this is an excel file with all of the extracted raw fluorescence intensities for Jin et al at the top, log2 at the bottom)

UMFOS.txt (this file contains the normalized relative fluorescence intensities used in the gene-specific models))

SGAsig.xls (this is the results file mentioned in Jin et al).

SexSpecificList.txt (this is another results file; note that the Nicotine dataset is not yet published)

CloneLUT.xls   (an Excel file listing the clones, their identity, and whether the sequence was reconfirmed after arraying)

 

Original ScanAlyze files:

 

READ ME  for Aging (this file shows which treatments are on which arrays for the Jin et al experiment)

 

MFCS1a.DAT

MFCS1b.DAT

RRslide2a.DAT (note: this is an older scan)

RRslide2b.DAT (note: this is an older scan)

MFCS3a.DAT

MFCS3b.DAT

MFCS4a.DAT

MFCS4b.DAT

MFCS5a.DAT

MFCS5b.DAT

MFCS6a.DAT

MFCS6b.DAT

MFCS7a.DAT

MFCS7b.DAT

MFCS9a.DAT

MFCS9b.DAT

MFCS10a.DAT

MFCS10b.DAT

MFCS11a.DAT

MFCS11b.DAT

MFCS12a.DAT

MFCS15a.DAT

MFCS15b.DAT

MFCS16a.DAT

(note: Slides 8, 13, 12b, and 16b were lower quality duplicates not included in the published data set).

 

Template.pdf  (This is a pdf showing the location of the 48 12x8 grids used to collect the data. 

Note that there are only 8 clones in the last grid of each sector [12, 24, 36, and 28].)

The following are .tif files of each Channel for four early Scans, but were not used to extract the data in the DAT files above.

RRSlide10b_Cy3

RRSlide10b_Cy5

RRSlide11b_Cy3

RRSlide11b_Cy5

RRSlide16a_Cy3

RRSlide16a_Cy5

RRSlide16b_Cy3

RRSlide16b_Cy5