| Unique analyses |
Implements
population specific F-statistics, CoreSet analysis, structure inference
based on EM, trio haplotype estimation, robust marker selection. Not available in any other
package. |
| GUI-based batch system |
Support
multiple dataset. Multiple threading system will allow the user to
cancel or pause/resume the analysis anytime. Results will be
automatically saved. |
| 2D Viewer |
Support
user-defined plotting. Support series of different levels of
significance. Plot can be exported as image or graphic. |
| Excel integration |
Integrate with
Excel. Table-like data objects can be directly opened in Excel. Easily
import tables from Excel to PowerMarker. Directly call Excel for
triangle plot. |
| Object explorer |
Manage
all the data objects in an object explorer. Support drag and drop, allow
the user to create new folders. |
| Haplotype estimation |
Estimate
haplotype frequency using EM/Bisection EM algorithm. Up to 100 times
faster than any other implementations. |
| Frequency-based distance |
Support 19
different distances for frequency data. |
| Disequilibrium analysis |
Include Hardy-Weinberg test/statistics, two-locus linkage disequilibrium
test/statistics/2D matrix, multi-locus linkage disequilibrium test. |
| Batch import/export |
Import
dataset from a few clicks! Support batch import for advanced users.
Export all the data objects in a project to text files or tables! |
| SNP simulation |
Implement a
coalescence model with or without recombination hotspots |
