% JZmapqtl
Calculates the likelihood ratio test statistics of the dataset in qtlcart.cro using the map in qtlcart.map.
% nice JZmapqtl -A -V -i corn.cro -m corn.map -M 6 -t 3 -I 34 &
Calculates the likelihood ratio test statistics of the dataset in corn.cro using the map in corn.map. Model 6 is used for analysis. This file has two traits, so specifying trait 3 means that both traits are analyzed. Hypothesis 34 means that GxE interactions are also analyzed. The program is nice'd as a courtesy to other users, and run in the background so that the user can logout and relax.