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Some markers or traits may have been typed for a small proportion of individuals in the
dataset. Such markers or traits can be
eliminated from the data set. Option 5 will allow you to specify a trait number, and
then eliminate individuals with missing data for that trait.
Choosing option 6 will require a tolerance level
for the percentage of missing marker data.
The -M option specifies this number, which must be in the range . If option 6 is selected, Prune will eliminate
individuals with this percentage of missing marker data.