Extraction: gzip -dc binaries.tar.gz | tar -xvf - emgi.x: htr program cntcols.x, pcols.x: files required by the sliding window script (emgi.sh) emgi.sh: sliding window script. Check that the 1st line correctly points to "bash" Try 6-marker "sliding window" analysis using data file dat.txt and header file hdr.txt from this directory: ./emgi.sh dat.txt hdr.txt 6 x